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Emma Thorpe, PhD studentship, University of Essex (2007-2011)

Summary

This study investigated the community composition and activity rates of two important groups of microorganisms – the ammonia oxidisers and the methane oxidising bacteria – at Hockham Heath as well as at a non N-impacted site, Alice Holt, Surrey.

Background

  • Hockham Heath at Thetford Forest is characterised by high levels of NH4+ deposition due to the proximity of pig and chicken farms.
  • A gradient of NH4+ and NO3 has been identified on a 300 m transect through the Corsican Pine and Beech plots.
  • Ammonia oxidising bacteria (AOB) and archaea (AOA) are responsible for the first, rate-limiting step in nitrification- ammonia oxidation – which results in the production of NO3.
  • An increase in NH4+ deposition may lead to increased rates of ammonia oxidation and NO3 production. Whilst NH4+ is bound to the soil matrix, NO3 is soluble and susceptible to leaching, leading to a loss in N from the soil and pollution of surface and groundwater systems.
  • Additionally, NH4+ and NO3 have been indicated as inhibitors of methane oxidation.
  • Methane oxidation by methane oxidising bacteria (MOB) is the only known biological sink for methane, a potent greenhouse gas.
  • It is therefore important to determine the impact of elevated NH4+ and NO3 concentrations on methane oxidation.

Research objectives

To identify the community structure, abundance and activity of MOB, AOB and AOA in forest soils subject to increasing nitrogen deposition (NH4+ and NO3) in relation to tree species, Corsican Pine (Pinus nigra) and Beech (Fagus sylvatica).

Hypothesis

  • Where NH4+ and NO3 concentrations are high, methane oxidation potential will be inhibited and nitrification stimulated.
  • Along the soil N gradient, changes in community structure and abundance of AOB, AOA and MOB may result in changes in the overall in situ biogeochemical cycling of C and N.
  • Seasonal variation, pH and tree species may select for particular AOB, AOA and MOB genotypes which will influence methane oxidation and nitrification potential within the soils.

Method Overview

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Our Involvement

This research was undertaken by Emma Thorpe at University of Essex, with supervision by Dr. Elena Vanguelova at Forest Research.

Funding & partners
  • University of Essex logo
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